1warning: could not read HEAD ref from repo at '/var/lib/nixbot/worktrees/scheduled-62-update-packages-update-packages-27', using 'master'2warning: could not read HEAD ref from repo at '/var/lib/nixbot/worktrees/scheduled-62-update-packages-update-packages-27', using 'master'3building '/nix/store/8braj8s4in80r3qqf5spfday0i7gksa6-effect-update-packages-env.drv'...4Cloning into 'repo'...56Creating PR for biotite78Updating biotite (custom)9 Running: packages/biotite/update.py10biotite already at 1.7.111 No changes, already up to date1213Creating PR for consurf1415Updating consurf (custom)16 Running: packages/consurf/update.py17consurf already at f4a3bc126 (2026-06-23)18 No changes, already up to date1920Creating PR for evcouplings2122Updating evcouplings (nix-update)23 Running: nix-update --flake evcouplings24$ nix-instantiate --eval --json --strict /nix/store/wfm8jx5jv0fbg7m8vqg7azclpa152gd1-nix-update-1.16.0/lib/python3.13/site-packages/nix_update/eval.nix --argstr importPath /build/tmpk5h5fzzt/worktree --argstr attribute '["evcouplings"]' --arg isFlake true --arg sanitizePositions true --argstr flakeImportPath /nix/store/57f83vbkb95vn8zaxscnqj31kfjfzhcd-source25fetch https://github.com/debbiemarkslab/EVcouplings/releases.atom26Not updating version, already 0.2.127$ git -C /build/tmpk5h5fzzt/worktree diff -- /build/tmpk5h5fzzt/worktree/packages/evcouplings28No changes detected, skipping remaining steps29 No changes, already up to date3031Creating PR for folddisco3233Updating folddisco (nix-update)34 Running: nix-update --flake folddisco35$ nix-instantiate --eval --json --strict /nix/store/wfm8jx5jv0fbg7m8vqg7azclpa152gd1-nix-update-1.16.0/lib/python3.13/site-packages/nix_update/eval.nix --argstr importPath /build/tmpm9afeuam/worktree --argstr attribute '["folddisco"]' --arg isFlake true --arg sanitizePositions true --argstr flakeImportPath /nix/store/57f83vbkb95vn8zaxscnqj31kfjfzhcd-source36fetch https://github.com/steineggerlab/folddisco/releases.atom37$ git diff --color=never --word-diff=porcelain -- /build/tmpm9afeuam/worktree/packages/folddisco/default.nix38Not updating version, already 2-9375a2d39$ git -C /build/tmpm9afeuam/worktree diff -- /build/tmpm9afeuam/worktree/packages/folddisco40No changes detected, skipping remaining steps41 No changes, already up to date4243Creating PR for foldmason4445Updating foldmason (nix-update)46 Running: nix-update --flake foldmason47$ nix-instantiate --eval --json --strict /nix/store/wfm8jx5jv0fbg7m8vqg7azclpa152gd1-nix-update-1.16.0/lib/python3.13/site-packages/nix_update/eval.nix --argstr importPath /build/tmpw59ptbab/worktree --argstr attribute '["foldmason"]' --arg isFlake true --arg sanitizePositions true --argstr flakeImportPath /nix/store/57f83vbkb95vn8zaxscnqj31kfjfzhcd-source48fetch https://github.com/steineggerlab/foldmason/releases.atom49$ git diff --color=never --word-diff=porcelain -- /build/tmpw59ptbab/worktree/packages/foldmason/default.nix50Not updating version, already 4-dd3c23551$ git -C /build/tmpw59ptbab/worktree diff -- /build/tmpw59ptbab/worktree/packages/foldmason52No changes detected, skipping remaining steps53 No changes, already up to date5455Creating PR for foldseek5657Updating foldseek (nix-update)58 Running: nix-update --flake foldseek59$ nix-instantiate --eval --json --strict /nix/store/wfm8jx5jv0fbg7m8vqg7azclpa152gd1-nix-update-1.16.0/lib/python3.13/site-packages/nix_update/eval.nix --argstr importPath /build/tmpmo58qi_9/worktree --argstr attribute '["foldseek"]' --arg isFlake true --arg sanitizePositions true --argstr flakeImportPath /nix/store/57f83vbkb95vn8zaxscnqj31kfjfzhcd-source60fetch https://github.com/steineggerlab/foldseek/releases.atom61$ git diff --color=never --word-diff=porcelain -- /build/tmpmo58qi_9/worktree/packages/foldseek/default.nix62Not updating version, already 10-941cd3363$ git -C /build/tmpmo58qi_9/worktree diff -- /build/tmpmo58qi_9/worktree/packages/foldseek64No changes detected, skipping remaining steps65 No changes, already up to date6667Creating PR for interproscan6869Updating interproscan (custom)70 Running: packages/interproscan/update.py71interproscan already at 5.78-109.072 No changes, already up to date7374Creating PR for plmc7576Updating plmc (custom)77 Running: packages/plmc/update.py78plmc already at 18c9e55e3 (2023-01-21)79 No changes, already up to date8081Creating PR for psipred8283Updating psipred (nix-update)84 Running: nix-update --flake psipred85$ nix-instantiate --eval --json --strict /nix/store/wfm8jx5jv0fbg7m8vqg7azclpa152gd1-nix-update-1.16.0/lib/python3.13/site-packages/nix_update/eval.nix --argstr importPath /build/tmpkj8m23bz/worktree --argstr attribute '["psipred"]' --arg isFlake true --arg sanitizePositions true --argstr flakeImportPath /nix/store/57f83vbkb95vn8zaxscnqj31kfjfzhcd-source86fetch https://github.com/psipred/psipred/releases.atom87Not updating version, already 4.088$ git -C /build/tmpkj8m23bz/worktree diff -- /build/tmpkj8m23bz/worktree/packages/psipred89No changes detected, skipping remaining steps90 No changes, already up to date9192Creating PR for thermompnn9394Updating thermompnn (custom)95 Running: packages/thermompnn/update.py96thermompnn already at 2b04fd370 (2026-03-26)97 No changes, already up to date9899Creating PR for usalign100101Updating usalign (custom)102 Running: packages/usalign/update.py103usalign already at 177cc8a2b (20260611)104 No changes, already up to date105106Results: 11 succeeded, 0 failed