these 7 derivations will be built: /nix/store/ql7j4364fhwr8s3cyr6c00hzsrfc179m-source.drv /nix/store/08bl9dwx5nsbwmvrw4p524hl8wj3jl3q-python3.14-biotraj-1.2.2.drv /nix/store/vkrz4d8hk22jw7p52czp3s4hq5hd1qqa-crate-numpy-0.27.1.tar.gz.drv /nix/store/8j80m4w3rnjc4017adk5cxmh7vawnl90-numpy-0.27.1.drv /nix/store/h3qfi6vx0c92191y29p4v3p3vdmppwgz-cargo-vendor-dir.drv /nix/store/p7visbfvbrj891nnimli2lcwxmiy91nl-source.drv /nix/store/qla7qfgv2f4zvd818ajpsaxya7cwzkrf-python3.14-biotite-1.7.1.drv these 22 paths will be fetched (8.1 MiB download, 35.4 MiB unpacked): /nix/store/2xz9sa2938z2z6bpz3f5yb5k9nhgpah3-autocfg-1.5.1 /nix/store/3gbz1lgbhdrcicrar1a9jsgic375skgx-either-1.16.0 /nix/store/jv8mnmyb58f2j129mkkg2rd2j9pg0pp1-itertools-0.14.0 /nix/store/wrlw9vn3a29p4ys696qfm00k96l2zh2n-libc-0.2.186 /nix/store/8mlvla4hs5f7jmy9r1f2gd7liivc6chj-matrixmultiply-0.3.10 /nix/store/47mfwml9vhq2lpiz412glm1lp9rwg0rh-ndarray-0.17.2 /nix/store/cq1h1lwn3l55w3vms2n5zg1wx6bc7vim-portable-atomic-util-0.2.7 /nix/store/9w476973scss6l7gmx1p4k6c3nk3381h-pyo3-0.27.2 /nix/store/y4fkvcf1ngw2xhqf7c9vwww3125hddck-pyo3-build-config-0.27.2 /nix/store/n5jaq1yh7aw9srdav4fnyrj1ax1rn5j8-pyo3-ffi-0.27.2 /nix/store/fnp2wcb3gjb4ysqryfg78k0pxhhgmp5w-pyo3-macros-0.27.2 /nix/store/a0p74xmkq6v3rmfgihprnszhifyrjqkd-pyo3-macros-backend-0.27.2 /nix/store/fzdzffh6191yk9j9zgh8x8xqb0yb2pah-python3.14-cython-3.2.5 /nix/store/13mgni6kp5mwzn4khr2pl9ynwvhm0n26-python3.14-msgpack-1.1.2 /nix/store/ijaycm2ly5xmc6nrv0f6l8162jlb9vl0-python3.14-semantic-version-2.10.0 /nix/store/g242f6zv4cqcrzvq9pikyrzm3jjyshs6-python3.14-setuptools-rust-1.12.0 /nix/store/1hbzs95700ww3v81f96b7ri6f6k2y295-python3.14-setuptools-scm-10.0.5 /nix/store/25h125fvgqlbgqrm4zdwwa4iq6j5imhp-python3.14-vcs-versioning-1.1.1 /nix/store/kdjkaf84l85xsqwdjyqr8fh1d74n3abf-rawpointer-0.2.1 /nix/store/95dz8m8kbg4dfbrx86dnjgby12m27vg1-rustc-hash-2.1.2 /nix/store/bc8l143r6qbrr0njggr1ywlyn3m1sy57-smallvec-1.15.2 /nix/store/bqvy32c7qv5l76hclb2n0k1jbqm4bq3i-syn-2.0.118 building '/nix/store/k2ycz5adnbs1ghcfw5fsahxq7zscxzf6-source.drv' building '/nix/store/kz0y74zvdlk6qdqmy4nadm4fwm9wi2h6-source.drv' building '/nix/store/prhfjpmcvdahrvdia2gs246qicchnsly-crate-numpy-0.27.1.tar.gz.drv' source> structuredAttrs is enabled source> structuredAttrs is enabled crate-numpy-0.27.1.tar.gz> structuredAttrs is enabled source> source> trying https://github.com/biotite-dev/biotite/archive/refs/tags/v1.7.1.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> source> trying https://github.com/biotite-dev/biotraj/archive/refs/tags/v1.2.2.tar.gz crate-numpy-0.27.1.tar.gz> crate-numpy-0.27.1.tar.gz> trying https://static.crates.io/crates/numpy/0.27.1/download crate-numpy-0.27.1.tar.gz> % Total % Received % Xferd Average Speed Time Time Time Current crate-numpy-0.27.1.tar.gz> Dload Upload Total Spent Left Speed crate-numpy-0.27.1.tar.gz> 100 79488 100 79488 0 0 1.66M 0 0 building '/nix/store/8j80m4w3rnjc4017adk5cxmh7vawnl90-numpy-0.27.1.drv' building '/nix/store/h3qfi6vx0c92191y29p4v3p3vdmppwgz-cargo-vendor-dir.drv' source> 0 0 0 0 0 0 0 0 0 cargo-vendor-dir> structuredAttrs is enabled source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> 0 0 0 0 0 0 0 0 00:02 0 source> 100 3.35M 0 3.35M 0 0 1.04M 0 00:03 0 source> unpacking source archive /build/download.tar.gz building '/nix/store/08bl9dwx5nsbwmvrw4p524hl8wj3jl3q-python3.14-biotraj-1.2.2.drv' python3.14-biotraj-1.2.2> Sourcing python-remove-tests-dir-hook python3.14-biotraj-1.2.2> Sourcing python-catch-conflicts-hook.sh python3.14-biotraj-1.2.2> Sourcing python-remove-bin-bytecode-hook.sh python3.14-biotraj-1.2.2> Sourcing pypa-build-hook python3.14-biotraj-1.2.2> Using pypaBuildPhase python3.14-biotraj-1.2.2> Sourcing python-runtime-deps-check-hook python3.14-biotraj-1.2.2> Using pythonRuntimeDepsCheckHook python3.14-biotraj-1.2.2> Sourcing pypa-install-hook python3.14-biotraj-1.2.2> Using pypaInstallPhase python3.14-biotraj-1.2.2> Sourcing python-imports-check-hook.sh python3.14-biotraj-1.2.2> Using pythonImportsCheckPhase python3.14-biotraj-1.2.2> Sourcing python-namespaces-hook python3.14-biotraj-1.2.2> Sourcing python-catch-conflicts-hook.sh python3.14-biotraj-1.2.2> Running phase: unpackPhase python3.14-biotraj-1.2.2> unpacking source archive /nix/store/dhbi2zj1gg6nzx8bzax4b4x0g46x62ha-source python3.14-biotraj-1.2.2> source root is source python3.14-biotraj-1.2.2> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py" python3.14-biotraj-1.2.2> Running phase: patchPhase python3.14-biotraj-1.2.2> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-biotraj-1.2.2> Running phase: configurePhase python3.14-biotraj-1.2.2> no configure script, doing nothing python3.14-biotraj-1.2.2> Running phase: buildPhase python3.14-biotraj-1.2.2> Executing pypaBuildPhase python3.14-biotraj-1.2.2> Including all tracked files automatically python3.14-biotraj-1.2.2> Creating a wheel... python3.14-biotraj-1.2.2> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-biotraj-1.2.2> * Getting build dependencies for wheel... python3.14-biotraj-1.2.2> [1/3] Cythonizing src/biotraj/dcd.pyx python3.14-biotraj-1.2.2> [2/3] Cythonizing src/biotraj/trr.pyx python3.14-biotraj-1.2.2> [3/3] Cythonizing src/biotraj/xtc.pyx python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> By 2027-Feb-18, you need to update your project and remove deprecated calls python3.14-biotraj-1.2.2> or your builds will no longer be supported. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> corresp(dist, value, root_dir) python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> dist._finalize_license_expression() python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> self._finalize_license_expression() python3.14-biotraj-1.2.2> running egg_info python3.14-biotraj-1.2.2> creating src/biotraj.egg-info python3.14-biotraj-1.2.2> writing src/biotraj.egg-info/PKG-INFO python3.14-biotraj-1.2.2> writing dependency_links to src/biotraj.egg-info/dependency_links.txt python3.14-biotraj-1.2.2> writing requirements to src/biotraj.egg-info/requires.txt python3.14-biotraj-1.2.2> writing top-level names to src/biotraj.egg-info/top_level.txt python3.14-biotraj-1.2.2> writing manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> /nix/store/25h125fvgqlbgqrm4zdwwa4iq6j5imhp-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. python3.14-biotraj-1.2.2> return get_active_overrides().subprocess_timeout python3.14-biotraj-1.2.2> reading manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> reading manifest template 'MANIFEST.in' python3.14-biotraj-1.2.2> adding license file 'LICENSE.rst' python3.14-biotraj-1.2.2> writing manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> * Building wheel... python3.14-biotraj-1.2.2> [1/3] Cythonizing src/biotraj/dcd.pyx python3.14-biotraj-1.2.2> [2/3] Cythonizing src/biotraj/trr.pyx python3.14-biotraj-1.2.2> [3/3] Cythonizing src/biotraj/xtc.pyx python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> By 2027-Feb-18, you need to update your project and remove deprecated calls python3.14-biotraj-1.2.2> or your builds will no longer be supported. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> corresp(dist, value, root_dir) python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> dist._finalize_license_expression() python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> self._finalize_license_expression() python3.14-biotraj-1.2.2> running bdist_wheel python3.14-biotraj-1.2.2> running build python3.14-biotraj-1.2.2> running build_py python3.14-biotraj-1.2.2> creating build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/__init__.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/netcdf.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/utils.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/version.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> running egg_info python3.14-biotraj-1.2.2> writing src/biotraj.egg-info/PKG-INFO python3.14-biotraj-1.2.2> writing dependency_links to src/biotraj.egg-info/dependency_links.txt python3.14-biotraj-1.2.2> writing requirements to src/biotraj.egg-info/requires.txt python3.14-biotraj-1.2.2> writing top-level names to src/biotraj.egg-info/top_level.txt python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> /nix/store/25h125fvgqlbgqrm4zdwwa4iq6j5imhp-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. python3.14-biotraj-1.2.2> return get_active_overrides().subprocess_timeout python3.14-biotraj-1.2.2> reading manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> reading manifest template 'MANIFEST.in' python3.14-biotraj-1.2.2> adding license file 'LICENSE.rst' python3.14-biotraj-1.2.2> writing manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'biotraj.include' is absent from the `packages` configuration. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> # Package would be ignored # python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> Python recognizes 'biotraj.include' as an importable package[^1], python3.14-biotraj-1.2.2> but it is absent from setuptools' `packages` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> This leads to an ambiguous overall configuration. If you want to distribute this python3.14-biotraj-1.2.2> package, please make sure that 'biotraj.include' is explicitly added python3.14-biotraj-1.2.2> to the `packages` configuration field. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> Alternatively, you can also rely on setuptools' discovery methods python3.14-biotraj-1.2.2> (for example by using `find_namespace_packages(...)`/`find_namespace:` python3.14-biotraj-1.2.2> instead of `find_packages(...)`/`find:`). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package discovery" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> If you don't want 'biotraj.include' to be distributed and are python3.14-biotraj-1.2.2> already explicitly excluding 'biotraj.include' via python3.14-biotraj-1.2.2> `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, python3.14-biotraj-1.2.2> you can try to use `exclude_package_data`, or `include-package-data=False` in python3.14-biotraj-1.2.2> combination with a more fine grained `package-data` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package data files" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/datafiles.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> [^1]: For Python, any directory (with suitable naming) can be imported, python3.14-biotraj-1.2.2> even if it does not contain any `.py` files. python3.14-biotraj-1.2.2> On the other hand, currently there is no concept of package data python3.14-biotraj-1.2.2> directory, all directories are treated like packages. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> check.warn(importable) python3.14-biotraj-1.2.2> /nix/store/g13nfjvdbmszw808xyzvw35in1s30s68-python3.14-setuptools-82.0.1/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'biotraj.src' is absent from the `packages` configuration. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> # Package would be ignored # python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> Python recognizes 'biotraj.src' as an importable package[^1], python3.14-biotraj-1.2.2> but it is absent from setuptools' `packages` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> This leads to an ambiguous overall configuration. If you want to distribute this python3.14-biotraj-1.2.2> package, please make sure that 'biotraj.src' is explicitly added python3.14-biotraj-1.2.2> to the `packages` configuration field. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> Alternatively, you can also rely on setuptools' discovery methods python3.14-biotraj-1.2.2> (for example by using `find_namespace_packages(...)`/`find_namespace:` python3.14-biotraj-1.2.2> instead of `find_packages(...)`/`find:`). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package discovery" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> If you don't want 'biotraj.src' to be distributed and are python3.14-biotraj-1.2.2> already explicitly excluding 'biotraj.src' via python3.14-biotraj-1.2.2> `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, python3.14-biotraj-1.2.2> you can try to use `exclude_package_data`, or `include-package-data=False` in python3.14-biotraj-1.2.2> combination with a more fine grained `package-data` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package data files" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/datafiles.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> [^1]: For Python, any directory (with suitable naming) can be imported, python3.14-biotraj-1.2.2> even if it does not contain any `.py` files. python3.14-biotraj-1.2.2> On the other hand, currently there is no concept of package data python3.14-biotraj-1.2.2> directory, all directories are treated like packages. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> check.warn(importable) python3.14-biotraj-1.2.2> copying src/biotraj/.gitignore -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/dcd.c -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/dcd.pyx -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/dcdlib.pxd -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/trr.c -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/trr.pyx -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/trrlib.pxd -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/xdrlib.pxd -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/xtc.c -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/xtc.pyx -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> creating build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/dcdplugin.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/endianswap.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/fastio.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/largefiles.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/molfile_plugin.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/trr_header.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/vmdplugin.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdr_seek.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdrfile.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdrfile_trr.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdrfile_xtc.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> creating build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/.gitignore -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/README -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/dcdplugin.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/dcdplugin.license -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdr_seek.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdrfile.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdrfile_trr.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdrfile_xtc.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> running build_ext python3.14-biotraj-1.2.2> building 'biotraj.xtc' extension python3.14-biotraj-1.2.2> creating build/temp.linux-x86_64-cpython-314/src/biotraj/src python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/src/xdr_seek.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/src/xdrfile.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofint’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:495:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 495 | while (size >= num && num_of_bits < 32) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:541:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 541 | while (bytes[num_of_bytes] >= num) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘encodeints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:650:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 650 | if (num_of_bits >= num_of_bytes * 8) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:652:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 652 | for (i = 0; i < num_of_bytes; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:660:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 660 | for (i = 0; i < num_of_bytes-1; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘decodebits’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:700:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 700 | if (lastbits < num_of_bits) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:815:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 815 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:788:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 788 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:785:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 785 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1027:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1027 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1150:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1150 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1288:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1288 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1016:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1016 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1328 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1305:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1305 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1302:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1302 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1519:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1519 | if(size3>xfp->buf1size) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1634:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1634 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1749 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1509:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1509 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/src/xdrfile_xtc.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_xtc.o source> 100 82.78M 0 82.78M 0 0 10.58M 0 00:07 10.00M source> unpacking source archive /build/download.tar.gz python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c: In function ‘xtc_coord’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable] python3.14-biotraj-1.2.2> 66 | int i,j,result; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable] python3.14-biotraj-1.2.2> 66 | int i,j,result; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c: In function ‘read_xtc_nframes’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:119:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] python3.14-biotraj-1.2.2> 119 | if (NULL == xd) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:122:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ python3.14-biotraj-1.2.2> 122 | do { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/xtc.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/xtc.o error: hash mismatch in fixed-output derivation '/nix/store/k2ycz5adnbs1ghcfw5fsahxq7zscxzf6-source.drv': specified: sha256-FS5eACe7sQLxzPiyVobZ7dyzKovMutFJhs5qZlmi+7A= got: sha256-gbGrIkty6uF4h398sVY8XPaY26DVFHZwrcuI1rgSqFE= error: build of resolved derivation '/nix/store/k2ycz5adnbs1ghcfw5fsahxq7zscxzf6-source.drv' failed python3.14-biotraj-1.2.2> In function ‘__Pyx_PyLong_From_int’, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pf_7biotraj_3xtc_17XTCTrajectoryFile_14_write’ at src/biotraj/xtc.c:12402:16, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pw_7biotraj_3xtc_17XTCTrajectoryFile_15_write’ at src/biotraj/xtc.c:12088:13: python3.14-biotraj-1.2.2> src/biotraj/xtc.c:24453:22: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 24453 | return PyLong_FromLong((long) value); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c: In function ‘__pyx_pw_7biotraj_3xtc_17XTCTrajectoryFile_15_write’: python3.14-biotraj-1.2.2> src/biotraj/xtc.c:12110:7: note: ‘__pyx_v_status’ was declared here python3.14-biotraj-1.2.2> 12110 | int __pyx_v_status; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c: In function ‘__pyx_pf_7biotraj_3xtc_17XTCTrajectoryFile_10_read’: python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10176:17: warning: ‘__pyx_pybuffernd_framebuffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10176 | } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_framebuffer.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8812:21: note: ‘__pyx_pybuffernd_framebuffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8812 | __Pyx_LocalBuf_ND __pyx_pybuffernd_framebuffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10180:17: warning: ‘__pyx_pybuffernd_framebuffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10180 | } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_framebuffer.diminfo[1].shape)) __pyx_t_5 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8812:21: note: ‘__pyx_pybuffernd_framebuffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 8812 | __Pyx_LocalBuf_ND __pyx_pybuffernd_framebuffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10522:23: warning: ‘__pyx_pybuffernd_box_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10522 | } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_box_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8810:21: note: ‘__pyx_pybuffernd_box_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8810 | __Pyx_LocalBuf_ND __pyx_pybuffernd_box_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10526:23: warning: ‘__pyx_pybuffernd_box_stride.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10526 | } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_box_stride.diminfo[1].shape)) __pyx_t_5 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8810:21: note: ‘__pyx_pybuffernd_box_stride.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 8810 | __Pyx_LocalBuf_ND __pyx_pybuffernd_box_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10530:23: warning: ‘__pyx_pybuffernd_box_stride.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10530 | } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_box_stride.diminfo[2].shape)) __pyx_t_5 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8810:21: note: ‘__pyx_pybuffernd_box_stride.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 8810 | __Pyx_LocalBuf_ND __pyx_pybuffernd_box_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10568:23: warning: ‘__pyx_pybuffernd_prec_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10568 | } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_prec_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8816:21: note: ‘__pyx_pybuffernd_prec_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8816 | __Pyx_LocalBuf_ND __pyx_pybuffernd_prec_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10492:23: warning: ‘__pyx_pybuffernd_step_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10492 | } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_step_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8820:21: note: ‘__pyx_pybuffernd_step_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8820 | __Pyx_LocalBuf_ND __pyx_pybuffernd_step_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10510:23: warning: ‘__pyx_pybuffernd_time_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10510 | } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_time_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8824:21: note: ‘__pyx_pybuffernd_time_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8824 | __Pyx_LocalBuf_ND __pyx_pybuffernd_time_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10550:23: warning: ‘__pyx_pybuffernd_xyz_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10550 | } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_xyz_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8828:21: note: ‘__pyx_pybuffernd_xyz_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8828 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10554:23: warning: ‘__pyx_pybuffernd_xyz_stride.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10554 | } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_stride.diminfo[1].shape)) __pyx_t_5 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8828:21: note: ‘__pyx_pybuffernd_xyz_stride.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 8828 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10558:23: warning: ‘__pyx_pybuffernd_xyz_stride.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10558 | } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_stride.diminfo[2].shape)) __pyx_t_5 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8828:21: note: ‘__pyx_pybuffernd_xyz_stride.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 8828 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.5.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/bzzvmj6wh8a7mqvq9i54fmvpsdxz4zqj-tzdata-2026b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.5.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/bzzvmj6wh8a7mqvq9i54fmvpsdxz4zqj-tzdata-2026b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_xtc.o build/temp.linux-x86_64-cpython-314/src/biotraj/xtc.o -L/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotraj/xtc.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> building 'biotraj.trr' extension python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/src/xdr_seek.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/src/xdrfile.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofint’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:495:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 495 | while (size >= num && num_of_bits < 32) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:541:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 541 | while (bytes[num_of_bytes] >= num) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘encodeints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:650:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 650 | if (num_of_bits >= num_of_bytes * 8) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:652:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 652 | for (i = 0; i < num_of_bytes; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:660:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 660 | for (i = 0; i < num_of_bytes-1; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘decodebits’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:700:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 700 | if (lastbits < num_of_bits) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:815:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 815 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:788:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 788 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:785:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 785 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1027:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1027 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1150:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1150 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1288:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1288 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1016:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1016 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1328 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1305:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1305 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1302:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1302 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1519:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1519 | if(size3>xfp->buf1size) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1634:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1634 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1749 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1509:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable] python3.14-biotraj-1.2.2> 1509 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/src/xdrfile_trr.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_trr.o python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_trr.c: In function ‘do_trnheader’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] python3.14-biotraj-1.2.2> 111 | if (slen != strlen(version)+1) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] python3.14-biotraj-1.2.2> 121 | if (xdrfile_write_string(version,xd) != (strlen(version)+1) ) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/trr.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/trr.o python3.14-biotraj-1.2.2> src/biotraj/trr.c: In function ‘__pyx_pf_7biotraj_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’: python3.14-biotraj-1.2.2> src/biotraj/trr.c:15983:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘long int’} [-Wsign-compare] python3.14-biotraj-1.2.2> 15983 | __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_15); python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> In function ‘__Pyx_PyLong_From_int’, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pf_7biotraj_3trr_17TRRTrajectoryFile_16_write’ at src/biotraj/trr.c:14366:16, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pw_7biotraj_3trr_17TRRTrajectoryFile_17_write’ at src/biotraj/trr.c:13796:13: python3.14-biotraj-1.2.2> src/biotraj/trr.c:26388:22: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 26388 | return PyLong_FromLong((long) value); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c: In function ‘__pyx_pw_7biotraj_3trr_17TRRTrajectoryFile_17_write’: python3.14-biotraj-1.2.2> src/biotraj/trr.c:13826:7: note: ‘__pyx_v_status’ was declared here python3.14-biotraj-1.2.2> 13826 | int __pyx_v_status; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c: In function ‘__pyx_pf_7biotraj_3trr_17TRRTrajectoryFile_12_read’: python3.14-biotraj-1.2.2> src/biotraj/trr.c:11362:12: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11362 | if (unlikely(__pyx_t_6 != -1)) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9458:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9458 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11361:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11361 | } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9458:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9458 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11310:12: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11310 | if (unlikely(__pyx_t_6 != -1)) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9474:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9474 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11309:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11309 | } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9474:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9474 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11469:10: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11469 | if (unlikely(__pyx_t_6 != -1)) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9478:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9478 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11468:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11468 | } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9478:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9478 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11071:19: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11071 | } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_vel.diminfo[0].shape)) __pyx_t_6 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:2556:90: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 2556 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11084:42: note: in expansion of macro ‘__Pyx_BufPtrCContig3d’ python3.14-biotraj-1.2.2> 11084 | __pyx_v_frame_vel = ((rvec *)(&(*__Pyx_BufPtrCContig3d(__pyx_t_5numpy_float32_t *, __pyx_pybuffernd_vel.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_vel.diminfo[0].strides, __pyx_t_16, __pyx_pybuffernd_vel.diminfo[1].strides, __pyx_t_17, __pyx_pybuffernd_vel.diminfo[2].strides)))); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11075:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11075 | } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11079:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11079 | } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_6 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11128:19: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11128 | } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_forces.diminfo[0].shape)) __pyx_t_6 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:2556:90: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 2556 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11141:45: note: in expansion of macro ‘__Pyx_BufPtrCContig3d’ python3.14-biotraj-1.2.2> 11141 | __pyx_v_frame_forces = ((rvec *)(&(*__Pyx_BufPtrCContig3d(__pyx_t_5numpy_float32_t *, __pyx_pybuffernd_forces.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_forces.diminfo[0].strides, __pyx_t_17, __pyx_pybuffernd_forces.diminfo[1].strides, __pyx_t_16, __pyx_pybuffernd_forces.diminfo[2].strides)))); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11132:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11132 | } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11136:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11136 | } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_6 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.5.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/bzzvmj6wh8a7mqvq9i54fmvpsdxz4zqj-tzdata-2026b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.5.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/bzzvmj6wh8a7mqvq9i54fmvpsdxz4zqj-tzdata-2026b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_trr.o build/temp.linux-x86_64-cpython-314/src/biotraj/trr.o -L/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotraj/trr.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> building 'biotraj.dcd' extension python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/dcd.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/dcd.o python3.14-biotraj-1.2.2> In file included from src/biotraj/include/dcdplugin.h:1, python3.14-biotraj-1.2.2> from src/biotraj/dcd.c:1164: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 474 | static int fio_write_str(fio_fd fd, const char *str) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 470 | static int fio_read_int32(fio_fd fd, int *i) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 466 | static int fio_write_int32(fio_fd fd, int i) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 457 | static fio_size_t fio_ftell(fio_fd fd) { python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) { python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 394 | static int fio_fclose(fio_fd fd) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 366 | static int fio_open(const char *filename, int mode, fio_fd *fd) { python3.14-biotraj-1.2.2> | ^~~~~~~~ python3.14-biotraj-1.2.2> In function ‘__Pyx_PyLong_From_int’, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pf_7biotraj_3dcd_17DCDTrajectoryFile_18read’ at src/biotraj/dcd.c:9027:17: python3.14-biotraj-1.2.2> src/biotraj/dcd.c:18076:22: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 18076 | return PyLong_FromLong((long) value); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/dcd.c: In function ‘__pyx_pf_7biotraj_3dcd_17DCDTrajectoryFile_18read’: python3.14-biotraj-1.2.2> src/biotraj/dcd.c:7765:7: note: ‘__pyx_v_i’ was declared here python3.14-biotraj-1.2.2> 7765 | int __pyx_v_i; python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/047lmdjjwh0adxgk1x2jvfakbnbrwf5s-python3.14-numpy-2.5.0/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/include/python3.14 -c src/biotraj/src/dcdplugin.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/dcdplugin.o python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c: In function ‘read_dcdheader’: python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:129:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 129 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:146:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 146 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:164:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 164 | if (input_integer[0] != dcdcordmagic) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:341:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 341 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:358:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 358 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c: In function ‘read_dcdstep’: python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:526:17: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 526 | if (readlen != (rec_scale*6*sizeof(int) + 3*N*sizeof(float))) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:540:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 540 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:544:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 544 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> In file included from src/biotraj/src/dcdplugin.c:55: python3.14-biotraj-1.2.2> src/biotraj/include/endianswap.h: At top level: python3.14-biotraj-1.2.2> src/biotraj/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 96 | static void swap2_aligned(void *v, long ndata) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 32 | static void swap2_unaligned(void *v, long ndata) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> In file included from src/biotraj/src/dcdplugin.c:46: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 474 | static int fio_write_str(fio_fd fd, const char *str) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 470 | static int fio_read_int32(fio_fd fd, int *i) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.5.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/bzzvmj6wh8a7mqvq9i54fmvpsdxz4zqj-tzdata-2026b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.5.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/bzzvmj6wh8a7mqvq9i54fmvpsdxz4zqj-tzdata-2026b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotraj/dcd.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/dcdplugin.o -L/nix/store/jxyrvv4gbpnp3ap5iy7wxwl1sg4x2x88-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotraj/dcd.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> installing to build/bdist.linux-x86_64/wheel python3.14-biotraj-1.2.2> running install python3.14-biotraj-1.2.2> running install_lib python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/__init__.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/netcdf.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/utils.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/version.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/.gitignore -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcd.c -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcd.pyx -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcdlib.pxd -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trr.c -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trr.pyx -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trrlib.pxd -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xdrlib.pxd -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xtc.c -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xtc.pyx -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/dcdplugin.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/endianswap.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/fastio.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/largefiles.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/molfile_plugin.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/trr_header.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/vmdplugin.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdr_seek.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdrfile.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdrfile_trr.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdrfile_xtc.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/.gitignore -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/README -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/dcdplugin.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/dcdplugin.license -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdr_seek.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdrfile.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdrfile_trr.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdrfile_xtc.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xtc.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trr.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcd.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> running install_egg_info python3.14-biotraj-1.2.2> Copying src/biotraj.egg-info to build/bdist.linux-x86_64/wheel/./biotraj-1.2.2-py3.14.egg-info python3.14-biotraj-1.2.2> running install_scripts python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj-1.2.2.dist-info/WHEEL python3.14-biotraj-1.2.2> creating '/build/source/dist/.tmp-3i85qmn2/biotraj-1.2.2-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-biotraj-1.2.2> adding 'biotraj/.gitignore' python3.14-biotraj-1.2.2> adding 'biotraj/__init__.py' python3.14-biotraj-1.2.2> adding 'biotraj/dcd.c' python3.14-biotraj-1.2.2> adding 'biotraj/dcd.cpython-314-x86_64-linux-gnu.so' python3.14-biotraj-1.2.2> adding 'biotraj/dcd.pyx' python3.14-biotraj-1.2.2> adding 'biotraj/dcdlib.pxd' python3.14-biotraj-1.2.2> adding 'biotraj/netcdf.py' python3.14-biotraj-1.2.2> adding 'biotraj/trr.c' python3.14-biotraj-1.2.2> adding 'biotraj/trr.cpython-314-x86_64-linux-gnu.so' python3.14-biotraj-1.2.2> adding 'biotraj/trr.pyx' python3.14-biotraj-1.2.2> adding 'biotraj/trrlib.pxd' python3.14-biotraj-1.2.2> adding 'biotraj/utils.py' python3.14-biotraj-1.2.2> adding 'biotraj/version.py' python3.14-biotraj-1.2.2> adding 'biotraj/xdrlib.pxd' python3.14-biotraj-1.2.2> adding 'biotraj/xtc.c' python3.14-biotraj-1.2.2> adding 'biotraj/xtc.cpython-314-x86_64-linux-gnu.so' python3.14-biotraj-1.2.2> adding 'biotraj/xtc.pyx' python3.14-biotraj-1.2.2> adding 'biotraj/include/dcdplugin.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/endianswap.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/fastio.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/largefiles.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/molfile_plugin.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/trr_header.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/vmdplugin.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdr_seek.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdrfile.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdrfile_trr.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdrfile_xtc.h' python3.14-biotraj-1.2.2> adding 'biotraj/src/.gitignore' python3.14-biotraj-1.2.2> adding 'biotraj/src/README' python3.14-biotraj-1.2.2> adding 'biotraj/src/dcdplugin.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/dcdplugin.license' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdr_seek.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdrfile.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdrfile_trr.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdrfile_xtc.c' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/licenses/LICENSE.rst' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/METADATA' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/WHEEL' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/top_level.txt' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/RECORD' python3.14-biotraj-1.2.2> removing build/bdist.linux-x86_64/wheel python3.14-biotraj-1.2.2> Successfully built biotraj-1.2.2-cp314-cp314-linux_x86_64.whl python3.14-biotraj-1.2.2> Finished creating a wheel... python3.14-biotraj-1.2.2> Finished executing pypaBuildPhase python3.14-biotraj-1.2.2> buildPhase completed in 56 seconds python3.14-biotraj-1.2.2> Running phase: pythonRuntimeDepsCheckHook python3.14-biotraj-1.2.2> Executing pythonRuntimeDepsCheck python3.14-biotraj-1.2.2> Checking runtime dependencies for biotraj-1.2.2-cp314-cp314-linux_x86_64.whl python3.14-biotraj-1.2.2> Finished executing pythonRuntimeDepsCheck python3.14-biotraj-1.2.2> Running phase: installPhase python3.14-biotraj-1.2.2> Executing pypaInstallPhase python3.14-biotraj-1.2.2> Successfully installed biotraj-1.2.2-cp314-cp314-linux_x86_64.whl python3.14-biotraj-1.2.2> Finished executing pypaInstallPhase python3.14-biotraj-1.2.2> Running phase: pythonOutputDistPhase python3.14-biotraj-1.2.2> Executing pythonOutputDistPhase python3.14-biotraj-1.2.2> Finished executing pythonOutputDistPhase python3.14-biotraj-1.2.2> Running phase: fixupPhase python3.14-biotraj-1.2.2> shrinking RPATHs of ELF executables and libraries in /nix/store/wwc79yk6c3fgvgk7pdj3zz2ypi6sfy27-python3.14-biotraj-1.2.2 python3.14-biotraj-1.2.2> shrinking /nix/store/wwc79yk6c3fgvgk7pdj3zz2ypi6sfy27-python3.14-biotraj-1.2.2/lib/python3.14/site-packages/biotraj/dcd.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> shrinking /nix/store/wwc79yk6c3fgvgk7pdj3zz2ypi6sfy27-python3.14-biotraj-1.2.2/lib/python3.14/site-packages/biotraj/trr.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> shrinking /nix/store/wwc79yk6c3fgvgk7pdj3zz2ypi6sfy27-python3.14-biotraj-1.2.2/lib/python3.14/site-packages/biotraj/xtc.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> checking for references to /build/ in /nix/store/wwc79yk6c3fgvgk7pdj3zz2ypi6sfy27-python3.14-biotraj-1.2.2... python3.14-biotraj-1.2.2> patching script interpreter paths in /nix/store/wwc79yk6c3fgvgk7pdj3zz2ypi6sfy27-python3.14-biotraj-1.2.2 python3.14-biotraj-1.2.2> stripping (with command strip and flags -S -p) in /nix/store/wwc79yk6c3fgvgk7pdj3zz2ypi6sfy27-python3.14-biotraj-1.2.2/lib python3.14-biotraj-1.2.2> shrinking RPATHs of ELF executables and libraries in /nix/store/dv2mazzi1hzbk2kwl2g2d6i3xnwrz390-python3.14-biotraj-1.2.2-dist python3.14-biotraj-1.2.2> checking for references to /build/ in /nix/store/dv2mazzi1hzbk2kwl2g2d6i3xnwrz390-python3.14-biotraj-1.2.2-dist... python3.14-biotraj-1.2.2> patching script interpreter paths in /nix/store/dv2mazzi1hzbk2kwl2g2d6i3xnwrz390-python3.14-biotraj-1.2.2-dist python3.14-biotraj-1.2.2> Executing pythonRemoveTestsDir python3.14-biotraj-1.2.2> Finished executing pythonRemoveTestsDir python3.14-biotraj-1.2.2> Running phase: pythonCatchConflictsPhase python3.14-biotraj-1.2.2> Running phase: pythonRemoveBinBytecodePhase python3.14-biotraj-1.2.2> Running phase: pythonImportsCheckPhase python3.14-biotraj-1.2.2> Executing pythonImportsCheckPhase python3.14-biotraj-1.2.2> Check whether the following modules can be imported: biotraj error: Cannot build '/nix/store/qla7qfgv2f4zvd818ajpsaxya7cwzkrf-python3.14-biotite-1.7.1.drv'. Reason: 1 dependency failed. Output paths: /nix/store/79pf93ky085m68zd433zv1r74xhafdag-python3.14-biotite-1.7.1 /nix/store/mkcqcq76nf2smkw502lm0i5g6hm7r20k-python3.14-biotite-1.7.1-dist error: Build failed due to failed dependency