python3.13-evcouplings-0.2.1
x86_64-linux.package-evcouplings
· build #10
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-namespaces-hook13Sourcing python-catch-conflicts-hook.sh
unpackPhase
14unpacking source archive /nix/store/2gng8b8lig79qppb1fkisqnlg691ky1c-source15source root is source16setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/test/__init__.py"configurePhase
17no configure script, doing nothingbuildPhase
18Executing pypaBuildPhase19Creating a wheel...20pypa build flags: --no-isolation --outdir dist/ --wheel21* Getting build dependencies for wheel...22* Building wheel...23Successfully built evcouplings-0.3.0-py2.py3-none-any.whl24Finished creating a wheel...25Finished executing pypaBuildPhasepythonRuntimeDepsCheckHook
26Executing pythonRuntimeDepsCheck27Checking runtime dependencies for evcouplings-0.3.0-py2.py3-none-any.whl28Finished executing pythonRuntimeDepsCheckinstallPhase
29Executing pypaInstallPhase30/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/alignment.py:400: SyntaxWarning: invalid escape sequence '\d'31 m = re.search("(.+)/(\d+)-(\d+)", header)32/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/alignment.py:400: SyntaxWarning: invalid escape sequence '\d'33 m = re.search("(.+)/(\d+)-(\d+)", header)34/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:14: SyntaxWarning: invalid escape sequence '\w'35 "^Uni\w+\_(\w+).*/",36/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:17: SyntaxWarning: invalid escape sequence '\w'37 "^\w+\|(\w+)\|\w+\/",38/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:20: SyntaxWarning: invalid escape sequence '\w'39 "^(\w+).*/.*$",40/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:23: SyntaxWarning: invalid escape sequence '\w'41 "^\w+\|\w+\|(\w+)",42/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:14: SyntaxWarning: invalid escape sequence '\w'43 "^Uni\w+\_(\w+).*/",44/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:17: SyntaxWarning: invalid escape sequence '\w'45 "^\w+\|(\w+)\|\w+\/",46/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:20: SyntaxWarning: invalid escape sequence '\w'47 "^(\w+).*/.*$",48/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/ids.py:23: SyntaxWarning: invalid escape sequence '\w'49 "^\w+\|\w+\|(\w+)",50/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/protocol.py:423: SyntaxWarning: invalid escape sequence '\s'51 regex = re.compile("\s({})=".format(52/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/align/protocol.py:423: SyntaxWarning: invalid escape sequence '\s'53 regex = re.compile("\s({})=".format(54/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/compare/pdb.py:225: SyntaxWarning: invalid escape sequence '\*'55 numbering. End index or range is \*inclusive*\56/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/compare/pdb.py:225: SyntaxWarning: invalid escape sequence '\*'57 numbering. End index or range is \*inclusive*\58/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:51: SyntaxWarning: invalid escape sequence '\d'59 "focus": re.compile("Found focus (.+) as sequence (\d+)"),60/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:52: SyntaxWarning: invalid escape sequence '\d'61 "seqs": re.compile("(\d+) valid sequences out of (\d+)"),62/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:53: SyntaxWarning: invalid escape sequence '\d'63 "sites": re.compile("(\d+) sites out of (\d+)"),64/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:54: SyntaxWarning: invalid escape sequence '\d'65 "region": re.compile("Region starts at (\d+)"),66/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:56: SyntaxWarning: invalid escape sequence '\d'67 "samples": re.compile("Effective number of samples(.*): (\d+\.\d+)"),68/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:60: SyntaxWarning: invalid escape sequence '\d'69 re_iter = re.compile("(\d+){}".format(70/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:61: SyntaxWarning: invalid escape sequence '\s'71 "".join(["\s+(\d+\.\d+)"] * 6)72/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:51: SyntaxWarning: invalid escape sequence '\d'73 "focus": re.compile("Found focus (.+) as sequence (\d+)"),74/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:52: SyntaxWarning: invalid escape sequence '\d'75 "seqs": re.compile("(\d+) valid sequences out of (\d+)"),76/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:53: SyntaxWarning: invalid escape sequence '\d'77 "sites": re.compile("(\d+) sites out of (\d+)"),78/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:54: SyntaxWarning: invalid escape sequence '\d'79 "region": re.compile("Region starts at (\d+)"),80/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:56: SyntaxWarning: invalid escape sequence '\d'81 "samples": re.compile("Effective number of samples(.*): (\d+\.\d+)"),82/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:60: SyntaxWarning: invalid escape sequence '\d'83 re_iter = re.compile("(\d+){}".format(84/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/tools.py:61: SyntaxWarning: invalid escape sequence '\s'85 "".join(["\s+(\d+\.\d+)"] * 6)86/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/fold/tools.py:335: SyntaxWarning: invalid escape sequence '\s'87 "vs. (.+?)\s+Pairs=\s*(\d+), RMSD=\s*(\d+\.\d+), "88/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/fold/tools.py:336: SyntaxWarning: invalid escape sequence '\s'89 "MaxSub=\s*(\d+\.\d+), TM=\s*(\d+\.\d+), MSI=\s*(\d+\.\d+)"90/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/fold/tools.py:437: SyntaxWarning: invalid escape sequence '\s'91 m = re.compile("INFO\s*:\s*(\d+)\s*:\s*(\d+)\s+(.+)")92/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/fold/tools.py:335: SyntaxWarning: invalid escape sequence '\s'93 "vs. (.+?)\s+Pairs=\s*(\d+), RMSD=\s*(\d+\.\d+), "94/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/fold/tools.py:336: SyntaxWarning: invalid escape sequence '\s'95 "MaxSub=\s*(\d+\.\d+), TM=\s*(\d+\.\d+), MSI=\s*(\d+\.\d+)"96/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/fold/tools.py:437: SyntaxWarning: invalid escape sequence '\s'97 m = re.compile("INFO\s*:\s*(\d+)\s*:\s*(\d+)\s+(.+)")98/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/utils/app.py:109: SyntaxWarning: invalid escape sequence '\d'99 m = re.search("(\d+)-(\d+)", region)100/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/utils/app.py:109: SyntaxWarning: invalid escape sequence '\d'101 m = re.search("(\d+)-(\d+)", region)102Successfully installed evcouplings-0.3.0-py2.py3-none-any.whl103Finished executing pypaInstallPhasepythonOutputDistPhase
104Executing pythonOutputDistPhase105Finished executing pythonOutputDistPhasefixupPhase
106shrinking RPATHs of ELF executables and libraries in /nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1107checking for references to /build/ in /nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1...108patching script interpreter paths in /nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1109stripping (with command strip and flags -S -p) in /nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib /nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/bin110shrinking RPATHs of ELF executables and libraries in /nix/store/4c7b4aip4gp860cmg0csc7z4v3y9w1rd-python3.13-evcouplings-0.2.1-dist111checking for references to /build/ in /nix/store/4c7b4aip4gp860cmg0csc7z4v3y9w1rd-python3.13-evcouplings-0.2.1-dist...112patching script interpreter paths in /nix/store/4c7b4aip4gp860cmg0csc7z4v3y9w1rd-python3.13-evcouplings-0.2.1-dist113Rewriting #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13/bin/python3.13 to #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13114wrapping `/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/bin/evcouplings'...115Rewriting #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13/bin/python3.13 to #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13116wrapping `/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/bin/evcouplings_dbupdate'...117Rewriting #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13/bin/python3.13 to #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13118wrapping `/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/bin/evcouplings_runcfg'...119Rewriting #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13/bin/python3.13 to #!/nix/store/l9k0anq0z7zz81zcwy035jfwap9ga6rl-python3-3.13.13120wrapping `/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/bin/evcouplings_summarize'...121Executing pythonRemoveTestsDir122Finished executing pythonRemoveTestsDirinstallCheckPhase
123no Makefile or custom installCheckPhase, doing nothingpythonImportsCheckPhase
124Executing pythonImportsCheckPhase125Check whether the following modules can be imported: evcouplings evcouplings.align evcouplings.couplings evcouplings.mutate evcouplings.utils.config126/nix/store/9x5fdc7mgdxxsfghbn0halamaia5nllp-python3.13-evcouplings-0.2.1/lib/python3.13/site-packages/evcouplings/couplings/pairs.py:21: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.127 from pkg_resources import resource_filename128mkdir -p failed for path /homeless-shelter/.config/matplotlib: [Errno 13] Permission denied: '/homeless-shelter'129Matplotlib created a temporary cache directory at /build/matplotlib-byodmkfd because there was an issue with the default path (/homeless-shelter/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.